Package: soReta 0.1.0

soReta: Ready-to-Analyze Datasets from Camera Trap Data

Functions to build datasets ready for statistical analysis from camera trap data: GLMM/GAMM on counts/RAI at various temporal levels, group size, occupancy, kernel/circular analysis of activity patterns, temporal interactions between species, hierarchical diel models, and classic capture-mark-recapture. Input data must be formatted in the style produced by 'camtrapR', the standard convention in the field.

Authors:Orlando Tomassini [aut, cre]

soReta_0.1.0.tar.gz
soReta_0.1.0.zip(r-4.7-any)soReta_0.1.0.zip(r-4.6-any)soReta_0.1.0.zip(r-4.5-any)
soReta_0.1.0.tgz(r-4.6-any)soReta_0.1.0.tgz(r-4.5-any)
soReta_0.1.0.tar.gz(r-4.7-any)soReta_0.1.0.tar.gz(r-4.6-any)
soReta_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
soReta/json (API)

# Install 'soReta' in R:

install.packages('soReta', repos = c('https://orlandotomassini.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/orlandotomassini/soreta/issues

Datasets:

camOp_soReta - Example camera effort matrix for soReta
camtraps_soReta - Example station table for soReta
recordTable_soReta - Example recordTable for soReta
recordTableIndividuals_soReta - Example individually-identifiable recordTable for soReta

On CRAN:

4.00 score 12 downloads 25 exports 22 dependencies

Last updated from:6bbd1052a4. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel	OK	177
source / vignettes	OK	317
linux-release	OK	177
macos-release	OK	200
macos-oldrel	OK	192
windows-devel	OK	141
windows-release	OK	101
windows-oldrel	OK	97
wasm-release	OK	162

Exports:as_capture_strings build_cmr_block build_cmr_day build_day_total build_diel_binomial_block build_diel_binomial_month build_diel_binomial_period build_group_day_total build_group_size_block build_group_size_day build_group_size_events build_group_size_month build_group_size_period build_group_size_total build_occupancy_block build_occupancy_day build_site_block build_site_day build_site_month build_site_period build_site_total build_species_pair_interruptions build_species_pair_intervals extract_radians radians_to_env

Dependencies:cli cpp11 dplyr generics glue lifecycle lubridate magrittr pillar pkgconfig purrr R6 rlang stringi stringr tibble tidyr tidyselect timechange utf8 vctrs withr

Getting Started with soReta

Rendered fromsoReta.Rmdusingknitr::rmarkdown

Last update: 2026-08-25
Started: 2026-08-25

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Convert an individual x occasion table (or a list per species) into CMR capture-history strings	as_capture_strings
Build an N-day-block individual x block capture history (classic CMR)	build_cmr_block
Build a daily individual x day capture history (classic CMR)	build_cmr_day
Build a dataset with 1 row per calendar day, aggregating across all stations	build_day_total
Build a binomial site x N-day-block x time-bin x species dataset	build_diel_binomial_block
Build a binomial site x month x time-bin x species dataset	build_diel_binomial_month
Build a binomial site x period/season x time-bin x species dataset	build_diel_binomial_period
Build a non-aggregated, day-by-day site x day x time-bin x species dataset	build_diel_day
Build a dataset with 1 row per calendar day, with group size statistics across all stations	build_group_day_total
Build a site x N-day-block dataset with group size statistics per species	build_group_size_block
Build a site x day dataset with group size statistics per species	build_group_size_day
Build a dataset with 1 row per independent event, including group size	build_group_size_events
Build a site x month dataset with group size statistics per species	build_group_size_month
Build a site x period/season dataset with group size statistics per species	build_group_size_period
Build a dataset with 1 row per site, with group size statistics over the entire activity period	build_group_size_total
Build, for each species, a site x N-day-block detection history	build_occupancy_block
Build, for each species, a daily site x day detection history	build_occupancy_day
Build a site x N-day-block dataset with independent-event counts per species	build_site_block
Build a site x day dataset with independent-event counts per species	build_site_day
Build a site x month dataset with independent-event counts per species	build_site_month
Build a site x period/season dataset with independent-event counts per species	build_site_period
Build a dataset with 1 row per site, aggregating over the entire activity period	build_site_total
Compute the AA/ABA and BB/BAB intervals between two species (Parsons et al. 2016, T3/T4)	build_species_pair_interruptions
Compute the AB/BA intervals between two species (Niedballa et al. 2019 method), with censoring	build_species_pair_intervals
Example camera effort matrix for soReta	camOp_soReta
Example station table for soReta	camtraps_soReta
Extract, per species (and optionally per one or more groupings), a vector of times in radians	extract_radians
Create a separate object in the environment for each vector in a nested list of radians	radians_to_env
Example recordTable for soReta	recordTable_soReta
Example individually-identifiable recordTable for soReta	recordTableIndividuals_soReta